Does a given bacterial gene live on a plasmid or the chromosome? What
other genes live on the same plasmid?

In this episode, we hear from <a href="https://twitter.com/Sergi_Arredondo">Sergio Arredondo-Alonso</a> and <a href="https://aschuerch.github.io/">Anita Schürch</a>, whose
projects <a href="https://gitlab.com/sirarredondo/mlplasmids">mlplasmids</a> and <a href="https://gitlab.com/sirarredondo/gplas">gplas</a> answer these types of questions.


 

 
 Links:

<ul>
 <li><a href="https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.000224">mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species</a> (Sergio Arredondo-Alonso, Malbert R. C. Rogers, Johanna C. Braat, Tess D. Verschuuren, Janetta Top, Jukka Corander, Rob J. L. Willems, Anita C. Schürch)</li>
 <li><a href="https://www.biorxiv.org/content/10.1101/835900v1">gplas: a comprehensive tool for plasmid analysis using short-read graphs</a> (Sergio Arredondo-Alonso, Martin Bootsma, Yaïr Hein, Malbert R.C. Rogers, Jukka Corander, Rob JL Willems, Anita C. Schürch)</li>
</ul>

#41 Epidemic models with Kris Parag

A podcast about computational biology, bioinformatics, and next generation sequencing.